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Healing the Gut-Brain Axis: A Functional Approach to Health & Resilience

  • Writer: Michele McNiff
    Michele McNiff
  • Mar 4
  • 4 min read

I just did a talk about the Gut~Heart~Brain Connection.....Here are my take aways...



The Gut-Brain Connection & Why It Matters

The gut is often called the “second brain” due to its profound impact on mood, cognitive function, and stress resilience. The gut-brain axis serves as a two-way communication system via the vagus nerve, where the gut microbiome directly influences brain health and, in turn, is affected by our emotions, stress levels, and lifestyle choices.

A thriving gut microbiome helps regulate neurotransmitter production, reduces inflammation, and maintains the integrity of the blood-brain barrier.

When the microbiome is imbalanced—whether from poor diet, chronic stress, chronic antibiotics use or environmental toxins—it can contribute to mood disorders like anxiety and depression and increase the risk of neurodegenerative conditions such as

Alzheimer’s and Parkinson’s disease.

Recognizing the microbiome as a key player in brain health allows us to take a root-cause approach to healing by integrating nutrition, lifestyle practices, and

Functional Medicine interventions.

The Vagus Nerve & Gut Health: Strengthening Stress Resilience

The vagus nerve is a key player in the gut-brain connection, regulating digestion, stress response, and emotional balance.

Strengthening vagal tone & Activating the Heart center, enhances gut motility, reduces inflammation, and supports nervous system regulation.

Ways to Activate the Vagus Nerve:

~Bhramari (Humming Bee Breath): Vibrational breathing technique that calms the nervous system.

~Gargling & Singing: Stimulates throat muscles connected to the vagus nerve.

~Cold Exposure: Splashing cold water on the face or taking cold showers enhances parasympathetic activity.

~Earthing (Grounding): Walking barefoot in nature stabilizes nervous system function.

~Sound Healing & Music: Vibrational therapy supports nervous system balance and emotional well-being.


  • Wandering Sensory & Motor Nerve: VAGUS NERVE
    Wandering Sensory & Motor Nerve: VAGUS NERVE

Key Takeaways:

~The gut microbiome plays a crucial role in producing neurotransmitters like serotonin, dopamine, and GABA, which impact mood and cognition.

~Imbalances in the gut (leaky gut, dysbiosis) can contribute to increased stress, anxiety, and depression.

~Supporting gut health through diet, stress management, and movement enhances mental clarity, emotional regulation, and overall well-being.

The 5R Framework for Gut Restoration

Functional Medicine provides a structured approach to healing the gut and optimizing digestion through the 5R framework:

1. Remove – Eliminate Stressors

Identify and remove gut-disrupting factors such as processed foods, refined sugars, and inflammatory ingredients like gluten and dairy.

Conduct an elimination diet to pinpoint food intolerances.

Address gut infections such as pathogenic bacteria, yeast overgrowth, or parasites.

2. Replace – Support Digestive Function

Introduce digestive enzymes, stomach acid support (HCl), and bile salts if needed.

Incorporate gut-friendly foods such as ginger, apple cider vinegar, and fermented vegetables to enhance digestion.

3. Reinoculate – Restore Healthy Microbes

Replenish beneficial bacteria with probiotic-rich foods like yogurt, kefir, kimchi, sauerkraut, miso, and tempeh.

Feed gut bacteria with prebiotic foods like garlic, onions, leeks, asparagus, bananas, oats, and flaxseeds.

4. Repair – Strengthen the Gut Lining

Support gut barrier integrity with collagen-rich bone broth, omega-3s, and amino acids like glutamine.

Include anti-inflammatory nutrients such as zinc, vitamin C, and polyphenols from berries, green tea, and dark chocolate.

5. Rebalance – Optimize Lifestyle Factors

Reduce stress through meditation, yoga, breathwork, and sound healing.

Prioritize quality sleep (7–9 hours per night) to support gut healing and circadian balance.

Engage in gentle movement like walking, yoga, or rebounding to promote gut motility.

Eating for a Resilient Gut-Brain Axis

Why Focus on Plant-Based Fiber?

Fiber feeds beneficial gut bacteria, promoting the production of short-chain fatty acids (SCFAs) that regulate inflammation, neurotransmitters, and metabolism.

SCFAs strengthen the gut lining, support blood sugar balance, and enhance mood stability.

A fiber-rich diet encourages healthy digestion and weight management.

Foods to Support Mood & Gut Health

Category

Examples

Probiotic-Rich Foods

Yogurt, kefir, sauerkraut, kimchi, miso, tempeh

Prebiotic Foods

Garlic, onions, leeks, asparagus, bananas, artichokes

Polyphenol Foods

Green tea, dark chocolate, olive oil, berries

Omega-3s

Fatty fish (salmon, sardines), walnuts, flaxseeds

Gut-Healing Foods

Bone broth, collagen, ginger, turmeric

Magnesium-Rich Foods

Pumpkin seeds, spinach, almonds, cacao

Practical Steps to Improve Your Gut-Brain Connection Today

  1. Start your day with fiber and probiotics – A bowl of oats with ground flax seed with berries and yogurt/kefir nourishes gut bacteria.

  2. Practice mindful eating – Slow down, chew thoroughly, and avoid eating in a stressed state.

  3. Move daily – A 20-minute walk supports digestion and microbiome health.

  4. Incorporate breathwork and meditation – Activate the vagus nerve to reduce stress.

  5. Eat the rainbow – Diverse plant foods promote a resilient gut microbiome.

  6. Stay hydrated – Water and herbal teas support digestion and detoxification.


Empowering Your Gut for Resilient Health

Our bodies are wired for balance, and the gut-brain connection is a powerful reminder that what we eat, how we manage stress, and how we move through life all play a role in our mental and physical well-being. When we nourish the gut, we nourish the mind—creating the foundation for vitality, emotional balance, and long-term resilience.

One of the most effective ways to strengthen this connection is by activating heart coherence, a state where the heart, brain, and nervous system synchronize, fostering emotional stability and physiological balance. Techniques like heart-focused breathing, gratitude practices, and sound healing help regulate the autonomic nervous system, promoting vagal tone and enhancing gut-brain communication.

If you’re ready to take the next step in supporting your gut-brain health, start small. Incorporate one or two of these practices into your daily routine and notice how your body responds. Healing is a journey, and each mindful step brings us closer to harmony and well-being.


Want more support in optimizing your gut-brain connection? Join me for personalized wellness coaching or explore my guided sound healing sessions designed to reset the nervous system and promote inner balance.


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